Package: DDRTree
Type: Package
Title: Learning Principal Graphs with DDRTree
Version: 0.1.6
Date: 2026-02-24
Depends: irlba
Imports: Rcpp
LinkingTo: Rcpp, RcppEigen, BH
Description: Provides an implementation of the framework of reversed
        graph embedding (RGE) which projects data into a reduced
        dimensional space while constructs a principal tree which
        passes through the middle of the data simultaneously. DDRTree
        shows superiority to alternatives (Wishbone, DPT) for inferring
        the ordering as well as the intrinsic structure of the single
        cell genomics data. In general, it could be used to reconstruct
        the temporal progression as well as bifurcation structure of
        any datatype.
License: Artistic License 2.0
RoxygenNote: 6.0.1
NeedsCompilation: yes
Authors@R: c(person("Xiaojie", "Qiu", role = "aut"),
             person("Cole", "Trapnell", role = "aut"),
             person("Qi", "Mao", role = "aut"),
             person("Li", "Wang", role = "aut"),
             person("Brent", "Ewing", email = "bge@uw.edu", role = "cre"))
Packaged: 2026-09-30 08:10:36 UTC; root
Author: Xiaojie Qiu [aut], Cole Trapnell [aut], Qi Mao [aut], Li Wang
        [aut], Brent Ewing [cre]
Maintainer: Brent Ewing <bge@uw.edu>
Repository: https://brgew.r-universe.dev
Date/Publication: 2026-03-03 08:50:29 UTC
RemoteUrl: https://github.com/cran/DDRTree
RemoteRef: HEAD
RemoteSha: 630ab5f3574fc7bf2dbe9af507d1aaf475b7ebf9