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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "DDRTree" in publications use:'
type: software
license: Artistic-2.0
title: 'DDRTree: Learning Principal Graphs with DDRTree'
version: 0.1.6
doi: 10.32614/CRAN.package.DDRTree
abstract: Provides an implementation of the framework of reversed graph embedding
  (RGE) which projects data into a reduced dimensional space while constructs a principal
  tree which passes through the middle of the data simultaneously. DDRTree shows superiority
  to alternatives (Wishbone, DPT) for inferring the ordering as well as the intrinsic
  structure of the single cell genomics data. In general, it could be used to reconstruct
  the temporal progression as well as bifurcation structure of any datatype.
authors:
- family-names: Qiu
  given-names: Xiaojie
- family-names: Trapnell
  given-names: Cole
- family-names: Mao
  given-names: Qi
- family-names: Wang
  given-names: Li
- family-names: Ewing
  given-names: Brent
  email: bge@uw.edu
repository: https://brgew.r-universe.dev
commit: 630ab5f3574fc7bf2dbe9af507d1aaf475b7ebf9
date-released: '2026-02-24'
contact:
- family-names: Ewing
  given-names: Brent
  email: bge@uw.edu