Package: DDRTree 0.1.6

DDRTree: Learning Principal Graphs with DDRTree

Provides an implementation of the framework of reversed graph embedding (RGE) which projects data into a reduced dimensional space while constructs a principal tree which passes through the middle of the data simultaneously. DDRTree shows superiority to alternatives (Wishbone, DPT) for inferring the ordering as well as the intrinsic structure of the single cell genomics data. In general, it could be used to reconstruct the temporal progression as well as bifurcation structure of any datatype.

Authors:Xiaojie Qiu [aut], Cole Trapnell [aut], Qi Mao [aut], Li Wang [aut], Brent Ewing [cre]

DDRTree_0.1.6.tar.gz
DDRTree_0.1.6.zip(r-4.7)DDRTree_0.1.6.zip(r-4.6)DDRTree_0.1.6.zip(r-4.5)
DDRTree_0.1.6.tgz(r-4.6-x86_64)DDRTree_0.1.6.tgz(r-4.6-arm64)DDRTree_0.1.6.tgz(r-4.5-x86_64)DDRTree_0.1.6.tgz(r-4.5-arm64)
DDRTree_0.1.6.tar.gz(r-4.7-arm64)DDRTree_0.1.6.tar.gz(r-4.7-x86_64)DDRTree_0.1.6.tar.gz(r-4.6-arm64)DDRTree_0.1.6.tar.gz(r-4.6-x86_64)
DDRTree_0.1.6.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
DDRTree/json (API)
NEWS

# Install 'DDRTree' in R:
install.packages('DDRTree', repos = c('https://brgew.r-universe.dev', 'https://cloud.r-project.org'))
Uses libs:
  • c++– GNU Standard C++ Library v3

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

cpp

5.05 score 3 packages 54 scripts 4.6k downloads 42 mentions 4 exports 6 dependencies

Last updated from:630ab5f357. Checks:13 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64OK191
linux-devel-x86_64OK160
source / vignettesOK168
linux-release-arm64OK185
linux-release-x86_64OK157
macos-release-arm64OK161
macos-release-x86_64OK262
macos-oldrel-arm64OK240
macos-oldrel-x86_64OK312
windows-develOK143
windows-releaseOK163
windows-oldrelOK216
wasm-releaseOK124

Exports:DDRTreeget_major_eigenvaluepca_projection_Rsqdist_R

Dependencies:BHirlbalatticeMatrixRcppRcppEigen